L. Omberg, G. H. Golub and O. Alter, "A Tensor Higher-Order Singular Value Decomposition for Integrative Analysis of DNA Microarray Data From Different Studies," Proceedings of the National Academy of Sciences 104 (47), pp. 18371–18376 (November 2007) (supplemental material at http://www.bme.utexas.edu/research/orly/HOSVD/).





O. Alter, "Genomic Signal Processing: From Matrix Algebra to Genetic Networks," in Microarray Data Analysis: Methods and Applications, edited by M. J. Korenberg (Humana Press, Totowa, 2007), pp. 17–59.





O. Alter, "Discovery of Principles of Nature from Mathematical Modeling of DNA Microarray Data," Proceedings of the National Academy of Sciences 103 (44), pp. 16063 – 16064 (October 2006).





O. Alter and G. H. Golub, "Singular Value Decomposition of Genome-Scale mRNA Lengths Distribution Reveals Asymmetry in RNA Gel Electrophoresis Band Broadening," Proceedings of the National Academy of Sciences 103 (32), pp. 11828 – 11833 (August 2006) (supplemental material at http://www.bme.utexas.edu/research/orly/harmonic_oscillator/).





O. Alter and G. H. Golub, "Reconstructing the Pathways of a Cellular System from Genome-Scale Signals Using Matrix and Tensor Computations," Proceedings of the National Academy of Sciences 102 (49), pp. 17559–17564 (December 2005) (supplemental material at http://www.bme.utexas.edu/research/orly/network_decomposition/).





O. Alter and G. H. Golub, "Integrative Analysis of Genome-Scale Data Using Pseudoinverse Projection Predicts Novel Correlation Between DNA Replication and RNA Transcription," Proceedings of the National Academy of Sciences 101 (47), pp. 16577–16582 (November 2004) (supplemental material at http://www.bme.utexas.edu/research/orly/pseudoinverse/).





O. Alter, G. H. Golub, P. O. Brown and D. Botstein, "Novel Genome-Scale Correlation Between DNA Replication and RNA Transcription During the Cell Cycle in Yeast is Predicted by Data-Driven Models," in the Proceedings of the Miami Nature Biotechnology Winter Symposium on the Cell Cycle, Chromosomes and Cancer, edited by M. P. Deutscher, S. Black, P. E. Boehmer, G. D'Urso, T. Fletcher, F. Huijing, A. Marshall, B. Pulverer, B. Renault, J. D. Rosenblatt, J. M. Slingerland and W. J. Whelan (University of Miami School of Medicine, Miami, 2004) vol. 15, http://www.med.miami.edu/mnbws/documents/Alter-.pdf.





O. Alter, P. O. Brown and D. Botstein, "Generalized Singular Value Decomposition for Comparative Analysis of Genome-Scale Expression Datasets of Two Different Organisms," Proceedings of the National Academy of Sciences 100 (6), pp. 3351–3356 (March 2003) (supplemental material at http://genome-www.stanford.edu/GSVD/ and at http://www.bme.utexas.edu/research/orly/GSVD/).





T. Nielsen, R. B. West, S. C. Linn, O. Alter, M. A. Knowling, J. O'Connell, S. Zhu, M. Fero, G. Sherlock, J. R. Pollack, P. O. Brown, D. Botstein and M. van de Rijn, "Molecular Characterisation of Soft Tissue Tumours: a Gene Expression Study," Lancet 359 (9314), pp. 1301–1307 (April 2002) (supplemental material at http://genome-www.stanford.edu/sarcoma/).




O. Alter, P. O. Brown and D. Botstein, "Processing and Modeling Genome-Wide Expression Data Using Singular Value Decomposition," in Microarrays: Optical Technologies and Informatics, edited by M. L. Bittner, Y. Chen, A. N. Dorsel and E. R. Dougherty (International Society for Optical Engineering, Bellingham, 2001), vol. 4266, pp. 171–186 (supplemental material at http://genome-www.stanford.edu/SVD/ and at http://www.bme.utexas.edu/research/orly/SVD/SPIE_2001/)





O. Alter, P. O. Brown and D. Botstein, "D. Botstein, "Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling," Proceedings of the National Academy of Sciences 97 (18), pp. 10101–10106 (August 2000) (supplemental material at http://genome-www.stanford.edu/SVD/ and at http://www.bme.utexas.edu/research/orly/SVD/PNAS_2000/).