Supplemental material for L. Omberg, G. H. Golub and O. Alter, "A Tensor Higher-Order Singular Value Decomposition For Integrative Analysis of DNA Microarray Data From Different Studies," Proceedings of the National Academy of Sciences 104 (47), pp. 18371–18376 (November 2007).
A PDF format file, readable by Adobe Acrobat Reader.
PNAS_2007.pdf
Supplemental figures with captions in PDF format files, readable by Adobe Acrobat Reader.
A Mathematica 5.2 code file, executable by Mathematica 5.2 and readable by the freely available MathReader.
A PDF format file, readable by Adobe Acrobat Reader.

Yeast mRNA Expression Dataset

Reproduced from M. Shapira, E. Segal and D. Botstein, "Disruption of Yeast Forkhead-Associated Cell Cycle Transcription By Oxidative Stress," Molecular Biology of the Cell 15 (12), pp. 5659–5669 (December 2004); and from P. T. Spellman, G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein and B. Futcher, "Comprehensive Identification of Cell Cycle-Regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization," Molecular Biology of the Cell 9 (12), pp. 3273–3297 (December 1998).

mRNA Expression Classification of Yeast Genes

Reproduced from A. P. Gasch, P. T. Spellman, C. M. Kao, O. Carmel-Harel, M. B. Eisen, G. Storz, D. Botstein and P. O. Brown, "Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes," Molecular Biology of the Cell 11 (12), pp. 4241–4257 (December 2000); from C. J. Roberts, B. Nelson, M. J. Marton, R. Stoughton, M. R. Meyer, H. A. Bennett, Y. D. He, H. Dai, W. L. Walker, T. R. Hughes, M. Tyers, C. Boone and S. H. Friend, "Signaling and Circuitry of Multiple MAPK Pathways Revealed by a Matrix of Global Gene Expression Profiles," Science 287 (5454), pp. 873–880 (February 2000); and from P. T. Spellman, G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein and B. Futcher, "Comprehensive Identification of Cell Cycle-Regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization," Molecular Biology of the Cell 9 (12), pp. 3273–3297 (December 1998).

Transcription Factors' DNA-Binding Classification of Yeast Genes

Reproduced from C. T. Harbison, D. B. Gordon, T. I. Lee, N. J. Rinaldi, K. D. Macisaac, T. W. Danford, N. M. Hannett, J. B. Tagne, D. B. Reynolds, J. Yoo, E. G. Jennings, J. Zeitlinger, D. K. Pokholok, M. Kellis, P. A. Rolfe, K. T. Takusagawa, E. S. Lander, D. K. Gifford, E. Fraenkel and R. A. Young, "Transcriptional Regulatory Code of a Eukaryotic Genome," Nature 431 (7004), pp. 99–104 (September 2004).

Replication Initiation Proteins' DNA-Binding Classification of Yeast Genes

Reproduced from J. J. Wyrick, J. G. Aparicio, T. Chen, J. D. Barnett, E. G. Jennings, R. A. Young, S. P. Bell and O. M. Aparicio, "Genome-Wide Distribution of ORC and MCM Proteins in S. cerevisiae: High-Resolution Mapping of Replication Origins by Microarray Hybridization,"Science 294 (5550), pp. 2357–2360 (December 2001); and from I. Simon, J. Barnett, N. Hannett, C. T. Harbison, N. J. Rinaldi, T. L. Volkert, J. J. Wyrick, J. Zeitlinger, D. K. Gifford, T. S. Jaakkola and R. A. Young, "Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle," Cell 106 (6), pp. 697–708 (September 2001).

Selected Eigenarrays and Superpositions of Eigenarrays